D. J. Skinner, P. Lemaire , M. Mani
Physical modeling of embryonic transcriptomes identifies collective modes of gene expression
Submitted

G. Stepaniants, A. D. Hastewell, D. J. Skinner, J. F. Totz, and J. Dunkel
Discovering dynamics and parameters of nonlinear oscillatory and chaotic systems from partial observations
Phys. Rev. Research, 6, 043062 (2024).

T. Ohmura, D. J. Skinner, K. Neuhaus, G. P. T. Choi, J. Dunkel, K. Drescher
In vivo microrheology reveals local elastic and plastic responses inside three dimensional bacterial biofilms
Advanced Materials, 2314059 (2024).

M. Salvalaglio, D. J. Skinner, J. Dunkel, A. Voigt
Persistent homology and topological statistics of hyperuniform point clouds
Phys. Rev. Research, 6, 023107 (2024).

H. Jeckel, K. Nosho, K. Neuhaus, A. D. Hastewell, D. J. Skinner, D. Saha, N. Netter, N. Paczia, J. Dunkel and K. Drescher
Simultaneous spatiotemporal transcriptomics and microscopy of Bacillus subtilis swarm development reveal cooperation across generations
Nature Microbiology, (2023).

D. J. Skinner, H. Jeckel, A. C. Martin, K. Drescher, and J. Dunkel
Topological packing statistics of living and nonliving matter
Sci. Adv. 9, eadg1261 (2023).

H. Jeckel*, F. Diaz-Pascual*, D. J. Skinner*, B. Song*, E. Jiminez-Sibert, Kerstin Strenger, E. Jelli, S. Vaidya, J. Dunkel and K. Drescher
Shared biophysical mechanisms determine early biofilm architecture development across different bacterial species
PLoS Biol. 20, e3001846, (2022).

H. Kim, D. J. Skinner, D. Glass, A. Hamby, B. Stuart, J. Dunkel, and I. Riedel-Kruse.
4-bit adhesion logic enables universal multicellular interface patterning
Nature, 608, 324, (2022).
On the cover and featured in Nature News and Views.

D. J. Skinner, J. Dunkel
Improved bounds on entropy production in living systems
Proc. Natl Acad. Sci. U.S.A., 118, e2024300118 (2021).

D. J. Skinner, B. Song, H. Jeckel, E. Jelli, K. Drescher, J. Dunkel
Topological metric detects hidden order in disordered media
Phys. Rev. Lett., 126, 048101 (2021).
Editor's suggestion and featured in Physics magazine.

C. Rackauckas, Y. Ma, J. Martensen, C. Warner, K. Zubov, R. Supekar, D. J. Skinner, A. Ramadhan, A Edelman.
Universal Differential Equations for Scientific Machine Learning
arXiv:2001.04385

P. Pearce, B. Song, D. J. Skinner, R. Mok, R. Hartmann, P. K. Singh, H. Jeckel, J. S. Oishi, K. Drescher, J. Dunkel
Flow-induced symmetry breaking in growing bacterial biofilms
Phys. Rev. Lett. 123, 258101 (2019)

J. R. Lister, D. J. Skinner, T. M. J. Large
Viscous control of shallow elastic fracture: Peeling without precursors
J. Fluid Mech. 868, 119-140 (2019)

D. J. Skinner, R. Maulik
Meta-modeling strategy for data-driven forecasting.
Tackling Climate Change with Machine Learning workshop, NeurIPS 2020